PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0027500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 299aa    MW: 31219.2 Da    PI: 6.5133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0027500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.4e-14100146354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Spipo15G0027500 100 KSHSEAERRRRERINTHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 146
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.86397146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-12100146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-15101156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-14101156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-14103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-5110149No hitNo description
CDDcd048732.22E-6183253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQYNLTGVGG YANGIHVPQA PSWAPAALQF GCDSGVPLCS DPLGLAGLYL GGSEGLIRGG  60
GIGSALSVGA ASSPFAGLGA EFGKMNAQEI MDAKALAASK SHSEAERRRR ERINTHLAKL  120
RSLLPSTTKT DKASLLAEVI QHVKELKRQT TEIAEESPVP TESDELTVDS ASDEEGRFIV  180
RASLCCEDRS DLLPDLIKAL KSLKLRALKA EIATLGGRVR NVLVIASEND DSTGDPDCAS  240
RRHQSIATIH EALKAVMDRT STSEEPSGAT AVGGSGGGVK RQRTTGLGFS HIPVEGVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383631.11e-106PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y17e-76BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1D1YUG41e-123A0A1D1YUG4_9ARAE; Transcription factor AIG1
STRINGXP_008809828.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]