PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0023900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 303aa    MW: 34384.8 Da    PI: 8.4676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0023900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31166225159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  Spipo15G0023900 166 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCQEDMSILITTYEGTHNHP 225
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32151227IPR003657WRKY domain
SuperFamilySSF1182908.37E-28159227IPR003657WRKY domain
PROSITE profilePS5081128.874161227IPR003657WRKY domain
SMARTSM007741.4E-37166226IPR003657WRKY domain
PfamPF031068.3E-28167225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPDSLANDEA ELARMKEENR ILKEGIERAM KDYCDLRNKF AAIQQQERQK PTQDPEIFLS  60
LGGGVRQEFR SPGRLLSREE DDKIGSEEVD NLGLTLRMQT HANLPEREEE EEEEETEQKR  120
EELSNWLPMD VRQRTGDLAG IASRSFNPAN RKTRVSVRVR CQGPTMNDGC QWRKYGQKIA  180
KGNPCPRAYY RCTVAPGCPV RKQVQRCQED MSILITTYEG THNHPLPVGA TAMASTAAGK  240
PKHQTSRSSS ISRAWKRRDQ RQPMGTRVSL TYEEATSPSP LKVLKSKELE LSYNEVSTIV  300
KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-23153229176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083305.15e-86probable WRKY transcription factor 9
SwissprotQ9C9F03e-65WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A199W7V18e-85A0A199W7V1_ANACO; Putative WRKY transcription factor 9
STRINGXP_010245088.15e-82(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-63WRKY DNA-binding protein 9