PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0012800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 354aa    MW: 38622.8 Da    PI: 8.3899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0012800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07166187223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk F+r  nL+ H+r H
  Spipo15G0012800 166 FCEVCGKGFKRDANLRMHMRAH 187
                      6*******************99 PP
2zf-C2H212.30.00052250273123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ C+ ksFs   +Lk+H++++
  Spipo15G0012800 250 YPCSRCHkKSFSVMTDLKSHLKRC 273
                      99********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.49E-6163188No hitNo description
SMARTSM003550.0018165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.946165192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-6166187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0017166185No hitNo description
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SMARTSM0035538212245IPR015880Zinc finger, C2H2-like
SMARTSM00355110250271IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MALSGAASGG GLQRLAASDP KVPLSNLSLL GRRMEALRCF LADSLDRHAD IGGHKLQEVS  60
SEIASALRQI VLNGAALLSL SQAAPTAQAQ AQAQAQAQAQ AQAQAQAAAI CPAKGQGPDQ  120
AKSLGGIVER REEHKDSSAA EDDRDGGDYE VVEMDAVELL ADHVHFCEVC GKGFKRDANL  180
RMHMRAHGSQ FKTLEALAKP ELRREAKKTT RFSCPFPGCN RNRSHRRFRP LKSAVCVKSH  240
FRRSHCPKIY PCSRCHKKSF SVMTDLKSHL KRCGERQWRC SCGTSFSRKD KLFGHLALFE  300
GHMPAVSEIA GEGQEAELGN AEGGRNARMD PEFFEDLLLD GLETVDRAAW MDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120431.11e-114protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1D1XJ631e-132A0A1D1XJ63_9ARAE; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (Fragment)
STRINGXP_009796096.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.38e-75C2H2 family protein