PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0054200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 25900.6 Da PI: 5.0463 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 78 | 125 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K +Ka+iL Av+ +++L Spipo14G0054200 78 SKACREKMRRDKLNDRFLELGAILEPG---KPPKIDKAAILSDAVRMVNQL 125 5678**********************9...99***************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.08E-9 | 64 | 130 | No hit | No description |
PROSITE profile | PS50888 | 12.754 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 78 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-9 | 78 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 78 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-9 | 80 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MGTAENPSWL FDCPLMEEIP AEGGDFVGAG GGFFWPPQAF NGASNASIGF DGSVDSDSSK 60 ELPSRKRARP EAASLPSSKA CREKMRRDKL NDRFLELGAI LEPGKPPKID KAAILSDAVR 120 MVNQLRSEAQ KLKEANEGLQ ETIKELKAEK NELRDEKQRL KAEKESLEQQ VKAMSVPPSY 180 VPHSPMMPPG PFSVPRPAAG GGKLMMPVIG FSGFPMWQYM PPADVDTSQD VETCPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020081794.1 | 1e-110 | transcription factor ILR3-like | ||||
Refseq | XP_020092550.1 | 1e-110 | transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 4e-85 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1D1XMI7 | 1e-128 | A0A1D1XMI7_9ARAE; Transcription factor ILR3 (Fragment) | ||||
STRING | XP_008793739.1 | 1e-103 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0054200 |