PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0030800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 415aa    MW: 45980.1 Da    PI: 9.4427
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0030800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.81.1e-1623114187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r++ +    rs +qCk++++ l+k+yk +k++  +     ss++p+fd+l+a
  Spipo14G0030800  23 CWSEGATSTLIEAWGDRFLELNRGNLRQKQWQEVADAVnsRRTAVrrpPRSDIQCKNRIDTLKKKYKVEKARITNSGGALSSQWPFFDRLDA 114
                      7*************************************985555511256999******************99998788888*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2721115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEGREGAGAG KPPNPALPYR EDCWSEGATS TLIEAWGDRF LELNRGNLRQ KQWQEVADAV  60
NSRRTAVRRP PRSDIQCKNR IDTLKKKYKV EKARITNSGG ALSSQWPFFD RLDALIGSSE  120
ASSHKPSPPP PLAFPLPYRK NSSLPSASVA ACPSTARDKR HTLAAPSEDS SLLNRKYSAA  180
AAAAAAAAAE RKDEEAGPES SKSSTERPTR RGGQRGSSNG SAAVSDSDDA EAVRELARAI  240
LRFGEVYERV EAEKQRQMMD LEKERMEFTK GLEFQRMQIF VDCQLQLEKS KRAKRDPSDY  300
VKVFTSWDAL PFFALMGRAV LVKCPHGGLL TLPYSMPSLH KMLRSHPPPS EPGVSPVFGP  360
CGQMPSWEAV DFIIQHALTT EMQEHRNTLL DKEKYPKLVL FPVSIYQLPN AERV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920067.11e-99trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A1D1ZJH01e-115A0A1D1ZJH0_9ARAE; Uncharacterized protein
STRINGGSMUA_Achr5P09160_0017e-95(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.18e-40sequence-specific DNA binding transcription factors