PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0025000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HB-other
Protein Properties Length: 1538aa    MW: 172346 Da    PI: 5.6253
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0025000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-171874157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     r kR   t++qle Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k
  Spipo14G0025000 18 RPKRKMKTAYQLELLEKTYAVSTYPSESLRAELSVKLGLSDRQLQMWFCHRRLKDRK 74
                     56999**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-17474IPR009057Homeodomain-like
SuperFamilySSF466894.71E-161175IPR009057Homeodomain-like
PROSITE profilePS5007116.6651575IPR001356Homeobox domain
SMARTSM003896.4E-171779IPR001356Homeobox domain
CDDcd000864.61E-131874No hitNo description
PfamPF000464.7E-151874IPR001356Homeobox domain
PROSITE profilePS5082717.031561620IPR018501DDT domain
SMARTSM005711.5E-22561620IPR018501DDT domain
PfamPF027917.6E-18563617IPR018501DDT domain
PfamPF050665.1E-15743810IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.0E-7955998IPR028942WHIM1 domain
PfamPF156131.4E-1211391211IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1538 aa     Download sequence    Send to blast
MEAAEGESTK SPEGGEKRPK RKMKTAYQLE LLEKTYAVST YPSESLRAEL SVKLGLSDRQ  60
LQMWFCHRRL KDRKANEMAV TASGLSPLAE PRKAVARMAS PALARIEADM HSVKRYYEAM  120
HPPLPPPQTM LEVQAVSFVE SQLGERIRED GPILGMEFDP LPPGAFGAPI ETTTGQQKQL  180
VRPYDGKLFE RHDPKSIKTA SFLPNVEHCF IPSSSSHSGG KRKAAAAGSL VVHSQGAGTR  240
ALQEYQFLPE QPTVRSEAYE KIPSSHFYDS PVDNVSSRVS PLSTPGPYLH GNEHVTPNYA  300
FQGQTSSAGF LPQQGRQHVY NSGSEYDVVA SFTKPSSDTV FGSLHNVGIE NPYLSFDRRI  360
IQEEDATRID RKRKGEEARI AKEVEAHEKR IRRELEKQDV LRRKREEQMR KEMERHDRER  420
RKEEERLMRE KQREEERFQR EQRRENERRE KFLQKENRRA EKIRRKEELR REKEAARIKA  480
AHERATARRI AREYMELIED ERLELMELAA SNKGLSSIIL LDGDTLESMD TFRDTLSPFP  540
PTSVRQHFRR PFGIQPWADS EDNIGNLLMV WRFLITFADV LGLWPFTLDE FVQAFHDYDP  600
RLLGEIHIAL LKSIIKDIED VARTPAVSLG ANQSSAANPV GGHPHIVEGA YAWGFDIRSW  660
QTHLSPLTWP EVLRQFALSA GFGPHLKKRN VERAYFRDDN EGHDGEDIIS TLRNGSAVEN  720
AVALMREKGF SHLRRSRHRL TPGTVKFAAF HVLSLEGGRG LTILEVADKI QKSGLRDLTT  780
SKTPEASIAA ALSRDSKLFE RTAPSTYCVK PQFRKNPADA DAILAAAREK IRVFENGLSD  840
SEEAEKDTEE ADEAERDEDS ESDGAEDLEV DDVGAEEKLT KEDQLANENV ANTLDGLDNG  900
EGAAISVDVG MTSRIGLRKL DKGLSTPIEA LKDAAASDNH EASSVDPYSE IDESNSGEPW  960
VEGLMEGEYS DLSVEERLNA LVSLITVALE GNSIRIVLEE RLEAANALKK QMWAEAQLDK  1020
RRMKEEYMTK LQYSSFVGMK SEVPQAGGVN EGSHSPLLNV DIKSGDLNPY SAVNAEGSDL  1080
MCNQNNSCDM VGEKNLMGQE LAINADATPV QQYGYAAEKS RSQLKSYIGH RAEEMYVYRS  1140
LPLGQDRRRN RYWQFVTSAS RNDPGSGRIF FESKEGLWRL IDSEEAFDAL IASLDTRGIR  1200
ESYLHSVLTK IEMSFKEALR RGAQIISGSH SAQNMAKKEP GEGSSSPECD LGTESPRSTV  1260
CYPGSEALDP STSFKIELGQ NDREKNAALK RYRDFQNWSW KECFGSSPLC AAKYGKKRCS  1320
ELLGVCLTCY ECFLFEEKQC PSCCEALDAR QGAADENLTE DMPLCEKQKV DPRWSSKSSR  1380
LSHPARIQML KAQLSLVEVS IPPEALQRIW SDDYRRSWGI KLQSAASAEE LLQLLTRLEG  1440
AVARDYLSSS YATTSELAGA STAANAVDNP PSVSEPVAVL AWIPLTTAAV ALRLMEFDAS  1500
VSYMLHQKVE SNKDQEGGEF LVSSSSRFLS FHHGCYY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811887.10.0homeobox-DDT domain protein RLT2-like isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A1D1YWT40.0A0A1D1YWT4_9ARAE; Reticulocyte-binding protein 2 a
STRINGXP_008811887.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator