PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0024700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 523aa    MW: 57607.1 Da    PI: 8.8249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0024700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.8e-05115135323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F r  nL+ H r H
  Spipo14G0024700 115 CEICGKGFQRDQNLQLHRRGH 135
                      *******************88 PP
2zf-C2H217.21.4e-05189211123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H++t+
  Spipo14G0024700 189 WKCDKCSKRYAVQSDWKAHMKTC 211
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-5112135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-7112135No hitNo description
PROSITE profilePS5015711.489113135IPR007087Zinc finger, C2H2
SMARTSM003550.076113135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-5177210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-7184210No hitNo description
SMARTSM0035547189209IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MPNPVIAWVK HNIPRKNSSR ADTNASNGYV RKVFLNPRDA REDQGKGDSG KTVCVKILWH  60
GDGSGTCTLE SSEKRSIDGF DSQTCELDLL FKQDPEAEVI ALSPKTLLAT NRFLCEICGK  120
GFQRDQNLQL HRRGHNLPWK LKQRSTKEPR KRVYVCPEKS CVHHHPSRAL GDLTGIKKHF  180
CRKHGEKKWK CDKCSKRYAV QSDWKAHMKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL  240
AEETARLCAP SSSVSCVTTA ANGGAVSCQP PGASMRSTMV QHISSGFNKP GQGFSNATAL  300
SDLQSFGANF FGDSFPSRAN PHQLDYQLSC IYGNKAGPSP TSADLTCTSL PTTSEIKETA  360
VSHHLLASVP SLYSAQYQQP SAPPPDMSAT ALLQKAAQIG VAPIEPPFLW SLYSKSGGGG  420
IQVEDSNKFD NLFSLNPTGL NDIPVLSQLQ GFPTGHHLPQ KDELGGQTRD FLGVNVQAGK  480
VKENELGWIP LVQGEINELW DLSSVHIRRN TKRRCFKHMY SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34185247365Zinc finger protein JACKDAW
5b3h_F4e-34185247365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618493.11e-149PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH31e-109IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A1U8HJY31e-148A0A1U8HJY3_GOSHI; zinc finger protein NUTCRACKER-like
STRINGGorai.005G198900.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-110C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]