PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo14G0023000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NF-YB | ||||||||
Protein Properties | Length: 125aa MW: 13623.3 Da PI: 5.0031 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.4 | 4.2e-53 | 31 | 122 | 2 | 93 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 reqdrflPian++rim+k +P+n+ki+kdake+vqecvsefisfvtseas kcq+ekrkt+ngddllwa++tlGfedyvepl++yl+ yre+ Spipo14G0023000 31 REQDRFLPIANIGRIMRKGIPENGKIAKDAKESVQECVSEFISFVTSEASGKCQKEKRKTVNGDDLLWAMGTLGFEDYVEPLRLYLNMYREV 122 89****************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.0E-47 | 27 | 121 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.26E-36 | 33 | 122 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-27 | 36 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.7E-19 | 64 | 82 | No hit | No description |
PRINTS | PR00615 | 2.7E-19 | 83 | 101 | No hit | No description |
PRINTS | PR00615 | 2.7E-19 | 102 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MAEARAPESP ESGHSGGGDQ AGEGRSGSSL REQDRFLPIA NIGRIMRKGI PENGKIAKDA 60 KESVQECVSE FISFVTSEAS GKCQKEKRKT VNGDDLLWAM GTLGFEDYVE PLRLYLNMYR 120 EVLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 7e-48 | 29 | 121 | 1 | 93 | NF-YB |
4awl_B | 7e-48 | 29 | 121 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 7e-48 | 29 | 121 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791403.1 | 1e-65 | nuclear transcription factor Y subunit B-4-like isoform X1 | ||||
Refseq | XP_008791404.1 | 1e-65 | nuclear transcription factor Y subunit B-4-like isoform X2 | ||||
Refseq | XP_008791405.1 | 1e-65 | nuclear transcription factor Y subunit B-4-like isoform X3 | ||||
Swissprot | Q65XK1 | 2e-55 | NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4 | ||||
Swissprot | Q8VYK4 | 2e-55 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A2H3Y033 | 3e-64 | A0A2H3Y033_PHODC; nuclear transcription factor Y subunit B-4-like isoform X1 | ||||
TrEMBL | A0A2H3Y041 | 3e-64 | A0A2H3Y041_PHODC; nuclear transcription factor Y subunit B-4-like isoform X2 | ||||
TrEMBL | A0A2H3Y0L0 | 3e-64 | A0A2H3Y0L0_PHODC; nuclear transcription factor Y subunit B-4-like isoform X3 | ||||
STRING | XP_008791402.1 | 6e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.6 | 2e-58 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo14G0023000 |
Publications ? help Back to Top | |||
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