PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0020400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 332aa    MW: 35783.2 Da    PI: 4.7483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0020400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19108158256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr+++ +g+W+AeIrdps+   ++r +lg+f+tae Aa a+++a+ kl+g+
  Spipo14G0020400 108 RFRGVRQRP-WGKWAAEIRDPST---KTRLWLGTFDTAEAAAMAYDRAAVKLRGA 158
                      69*******.**********965...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.29E-21108167No hitNo description
SMARTSM003803.5E-37108171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-30108166IPR001471AP2/ERF domain
PfamPF008475.6E-13108157IPR001471AP2/ERF domain
PROSITE profilePS5103223.341108165IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-21108166IPR016177DNA-binding domain
PRINTSPR003676.3E-11109120IPR001471AP2/ERF domain
PRINTSPR003676.3E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGNEGSSSFF PAPAFKFTEI RRQVTKTFKP SSNGATFLPR LLRVSVVDGD ATDSSDEEDD  60
SFPSRRRRVK RYVQEIVVGE VSLRATAAPG GGKARPCKFE KPPAPPRRFR GVRQRPWGKW  120
AAEIRDPSTK TRLWLGTFDT AEAAAMAYDR AAVKLRGAAA LCNLPNSGEE PVLDSSSSPK  180
SVLCYAPKDE AEQKKMNPPD DRESPATKRT KAAAAAAAEE EVGKRRNPIF EDLEMGLGKD  240
LAALLLPLND LPLMDFSPAA PPPPGFPFAE MDDFGSVAVE EGPMELTGDS TWRVEEEFAD  300
LVDIDEFFNS DAPPPNPSPA GYSGGAPPAP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21104169170ATERF1
3gcc_A2e-21104169170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SUE32e-34CRF4_ARATH; Ethylene-responsive transcription factor CRF4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.15e-23cytokinin response factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]