PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0008700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 573aa    MW: 61255.8 Da    PI: 6.9168
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0008700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.5e-30225284159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg Hnh+
  Spipo14G0008700 225 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApGCPVRKQVQRCADDMSILITTYEGIHNHP 284
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-32210286IPR003657WRKY domain
SuperFamilySSF1182909.42E-28218286IPR003657WRKY domain
PROSITE profilePS5081128.92220286IPR003657WRKY domain
SMARTSM007742.4E-37225285IPR003657WRKY domain
PfamPF031069.0E-27226284IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MDVMVKRSSA VKENNKARTI SSEEDEDVLE LDIEADKKDG RKSTFPSPDQ KGSSFGGQDN  60
QLESTREEIG EMKQENERLK MILARIMNDY QSLQTHLIDV VNKGLDKESL ENAEADRETD  120
EPELVLLSLG TSSWRHKKEE KAITGTRSEG DEQVKGDLSL GLGTHSNSSH ENSFEDTKEE  180
EAAGEIWPPS KALKTMRSGE DEVSQSIHVK KARVSVRARC DAPTMNDGCQ WRKYGQKIAK  240
GNPCPRAYYR CTIAPGCPVR KQVQRCADDM SILITTYEGI HNHPLPMSAT SMASTTSAAA  300
GMLVSGSSSS RPSIPAAAMA PSGGVAGATL HGLNFGIPDD PRQRQLYLPN ASISSSPSHA  360
TITLDLTTPP SSSHSAQLGG FSSSFSAGPR FSHSNFSSSS SDPNLNQTTL WNSPFLTHGS  420
QAYGNKSPLG SFSVATQQPH ERFYHPYTQK PPNSSPLPDG AIAAATKAIT SDPGFQTALA  480
AAITSAVGGK GTQGMAETLF KNLRWGEHLS PVTNLASSPS GKGCGPSYLT RSAASNSSTP  540
QQGEIRFLQP SSGFSVCKSA SSSPPNNRER SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20212286174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017701728.11e-172probable WRKY transcription factor 72 isoform X2
TrEMBLA0A1D1YDU11e-179A0A1D1YDU1_9ARAE; Putative WRKY transcription factor 72 (Fragment)
STRINGXP_008809713.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-70WRKY DNA-binding protein 72