PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0050700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 294aa    MW: 31509 Da    PI: 8.6125
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0050700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30130188259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp+++ +tY+ eHnh+
  Spipo13G0050700 130 SDSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSKTDPSMLMVTYTCEHNHP 188
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.34124190IPR003657WRKY domain
SuperFamilySSF1182903.14E-26128190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-31128190IPR003657WRKY domain
SMARTSM007743.8E-36129189IPR003657WRKY domain
PfamPF031064.5E-26131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGSYFGEFTQ THQGEPGGDR RVPPAPHNVI APTWGHLPRA GPSSGGLGHT FSVFKHPRHH  60
ELGSTTFFNS GATAAGDSGG GGATAAQSRN QISSPRDAGF KKRKNQTKKV VCVPAPDAAG  120
GKPGGEIVPS DSWSWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS KTDPSMLMVT  180
YTCEHNHPLP TQKSSSPVRK VVSPGSAGAP AAAKSESPEA TEALHQIGQT MPPELSWTED  240
FFAELGELGE DSMSLVFSKE FVDSKLIGEG EEEDAMDVFR RFDWVKHSFG ESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-24104191280Disease resistance protein RRS1
5w3x_D6e-24104191280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194103PRDAGFKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788702.12e-68probable WRKY transcription factor 14
SwissprotO647476e-55WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A2H3XTU54e-67A0A2H3XTU5_PHODC; probable WRKY transcription factor 14
STRINGXP_008788702.17e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-48WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]