PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0044400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 893aa    MW: 97291.9 Da    PI: 6.4357
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0044400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Spipo13G0044400 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQSPPAQ--ELVARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 216
                      99*****************************86555554..8************************************************..78 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Spipo13G0044400 217 ENNQLLLGIRRA 228
                      88889****997 PP
2Auxin_resp119.42.8e-39253336183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rWpnS+Wrs+k
  Spipo13G0044400 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPLRWPNSHWRSVK 336
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-22126227No hitNo description
PfamPF023623.8E-23127228IPR003340B3 DNA binding domain
SMARTSM010193.8E-26127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.324127229IPR003340B3 DNA binding domain
PfamPF065073.4E-34253336IPR010525Auxin response factor
PfamPF023091.9E-9757850IPR033389AUX/IAA domain
SuperFamilySSF542773.07E-8759838No hitNo description
PROSITE profilePS5174523.373763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MRLSSSGLGI QPHEGEKRCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
ADSHIPNYPS LPPQLICQLH DVTMHADVET DEVYAQMTLQ PLSPQEQNDV YLPAELATPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ SPPAQELVAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKSVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPLRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPPPFS LRLKRPWLPG LPSLHAGKGD DFGLNSVMWL RDSDRGVQSL NFQGAAGSSG  420
PWIQPRIDAS FLGIQPDVYQ PMASVALQEM RGFDPSKQPS PPMLQFQQAQ CIPGTSAAQL  480
SPQFLQQLRS QSPQPFLQAM QDGQPQLQGQ QPHFLQPQLQ LHHSPFADQQ KVQQPPMQPQ  540
GSPVLPDQPV PTVVSALSQL ASTSQAHASS LQSISPFCQP QSFTGVNGST MAAASAVSPL  600
HGILGGFSPE EATQLLNLQR SSSSVSSAAW SNKRVAVEPL VPSGALCLLP QVKQLPQSTA  660
TLAPFPGREC SVDQEDSTDS QSNILFGVNI EQSSLLVQSG LPNLRAVATE TDSTAIPFGS  720
INYIGGPETE FPLNPVMAPS SCLDEPGFLQ APGHVGQVNP QDGTFVKVYK SGSFGRLLDI  780
TRFNSYPELR SELGRMFGLE GQLEDPLRSG WQLVFVDREG DVLLVGDDPW QEFVNSVWCI  840
KILSSQEVHQ MGKQGPGPGK GSGGSGCEDY VSRQTPRGGL GTGIMSVGAF DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591635747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598206.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1D1ZHG40.0A0A1D1ZHG4_9ARAE; Auxin response factor
STRINGXP_010275910.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]