PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0024500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CAMTA
Protein Properties Length: 381aa    MW: 42125.4 Da    PI: 5.4565
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0024500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1150.92.9e-47781863110
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      +e ++rwl++ e++ iLen+++ ++t e++++p+sgsl+L+nr+++r+fr+DG+ w++kk+g+tv E+he+LKvg+v+ l+cyYah+e np+fq
  Spipo13G0024500  78 SEaQNRWLRPAEVLFILENYAECSITPESPNQPPSGSLFLFNRRVLRFFRNDGHVWRRKKNGRTVGEAHERLKVGNVDKLNCYYAHGELNPSFQ 171
                      45599***************************************************************************************** PP

             CG-1  96 rrcywlLeeelekiv 110
                      rrcyw+L+  + +++
  Spipo13G0024500 172 RRCYWILDPVFMNVI 186
                      ********9887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143767.60773223IPR005559CG-1 DNA-binding domain
SMARTSM010761.9E-6776218IPR005559CG-1 DNA-binding domain
PfamPF038595.1E-4179181IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGAGGGLGGG GGSRCGFDLL LLGWPWLFFL FLGASASGLP RDAPQEIDAA KSEGLSVAAR  60
PKGSKMTRAG FEIGRLRSEA QNRWLRPAEV LFILENYAEC SITPESPNQP PSGSLFLFNR  120
RVLRFFRNDG HVWRRKKNGR TVGEAHERLK VGNVDKLNCY YAHGELNPSF QRRCYWILDP  180
VFMNVIQALD LKVALKPSLV NAVTALEHIV LVHYRDVAEG IYIPGKVSDS STSSPFTFNT  240
LVQAHIDGTT DFSCSPVPTE VASCESSVGT ANGDLDAYDT PEALRKIEFE LSLDDDYDSI  300
KEKISPYSGK DYSQPESYTN FRGEPMLDMH GIKADRSGYE GRDDDSNSYM LLQRTGLIDF  360
FINGKVDPGL DWFINPFNSH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905494.15e-66calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A2H3Z2H73e-61A0A2H3Z2H7_PHODC; calmodulin-binding transcription activator 4-like
STRINGXP_008807442.15e-62(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15485817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.15e-43Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains