PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0017600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 292aa    MW: 33004.5 Da    PI: 9.6034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0017600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.47.1e-5091371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPt+eel+++yL+kkv+ ++++l evi+evd++kvePw++++k++     ++ewy Fs++d+ky+tg r nrat++g+Wkatg+dk 
  Spipo13G0017600   9 VPPGFRFHPTEEELLQYYLRKKVALERIDL-EVIREVDLNKVEPWEIQEKCSIgsaLQNEWYLFSRKDRKYPTGLRMNRATAAGFWKATGRDKC 101
                      69****************************.99**************964333222456*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + s  ++lvg++ktLvfy grap+g+ktdW+mheyrl
  Spipo13G0017600 102 IRS-PEKLVGMRKTLVFYLGRAPNGQKTDWIMHEYRL 137
                      **9.889****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-575163IPR003441NAC domain
PROSITE profilePS5100555.5169163IPR003441NAC domain
PfamPF023651.8E-2610137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MASSSSSGVP PGFRFHPTEE ELLQYYLRKK VALERIDLEV IREVDLNKVE PWEIQEKCSI  60
GSALQNEWYL FSRKDRKYPT GLRMNRATAA GFWKATGRDK CIRSPEKLVG MRKTLVFYLG  120
RAPNGQKTDW IMHEYRLQGD NTVSALRLNR QEDGWVVCRV FKKKAFVSDA TTESTRRGGA  180
GDMLYPAAAT AAREPFYVDC HQPTFVRRQG GGACNQDFSL HHQPYPLPSS QDLLSGHRPP  240
AINGEWMFLN GGTVNARDRI PATASQLLDP KHLHHHPGEM ELWGYGKKSS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-4831649169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824150.14e-88protein BEARSKIN1-like
SwissprotQ9SV872e-83BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A2S3I6V28e-87A0A2S3I6V2_9POAL; Uncharacterized protein
STRINGPavir.J07268.1.p1e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.19e-86NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]