PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo13G0004800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 166aa MW: 18615.3 Da PI: 10.2981 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.8 | 2.4e-29 | 2 | 98 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f+k ltpsdv+k++rlv+pk++ae++ +g+ ++ l++ede g+ W+++++y+ +s++yvltkGW++F ++++L +gD+v+F++ + + + Spipo13G0004800 2 FEKPLTPSDVGKLNRLVIPKQYAERYfplDGD--SGLLLSFEDELGKIWQFRYSYWTSSQSYVLTKGWSRFIREKRLHAGDVVLFQRRRCyAGDRI 95 99*************************77656..6779************************************************6554455555 PP EEE CS B3 93 vvk 95 +++ Spipo13G0004800 96 FIG 98 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 8.19E-29 | 1 | 88 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-37 | 1 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-28 | 2 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.5E-19 | 2 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.198 | 2 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-26 | 2 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
LFEKPLTPSD VGKLNRLVIP KQYAERYFPL DGDSGLLLSF EDELGKIWQF RYSYWTSSQS 60 YVLTKGWSRF IREKRLHAGD VVLFQRRRCY AGDRIFIGWK RRAGQRGHLE AHVAARLGQA 120 YNPAAATSPP CPMTGGDTHL PSPTAGGSSR MLRLFGVNLR CGPVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-44 | 1 | 102 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-44 | 1 | 102 | 7 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820040.1 | 4e-60 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q9FNI3 | 7e-54 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A2I4EKW4 | 9e-59 | A0A2I4EKW4_JUGRE; B3 domain-containing protein At2g36080-like | ||||
STRING | XP_008799673.1 | 2e-58 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 3e-56 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo13G0004800 |