PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0053800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 653aa    MW: 69808 Da    PI: 6.0445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0053800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001543565123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++C++ F ++  L  H++ H
  Spipo12G0053800 543 YSCNYCHRKFFSSQALGGHQNAH 565
                      99*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd05904025507No hitNo description
SuperFamilySSF568015.49E-13428506No hitNo description
Gene3DG3DSA:3.40.50.9807.3E-3332194No hitNo description
PfamPF005011.7E-10443446IPR000873AMP-dependent synthetase/ligase
PROSITE patternPS004550190201IPR020845AMP-binding, conserved site
Gene3DG3DSA:3.40.50.9801.5E-44195349No hitNo description
Gene3DG3DSA:2.30.38.104.4E-29362437No hitNo description
Gene3DG3DSA:3.30.300.304.4E-17443507No hitNo description
PfamPF131934.2E-8455492IPR025110AMP-binding enzyme C-terminal domain
SuperFamilySSF576674.12E-6540570No hitNo description
PROSITE profilePS5015711.51543570IPR007087Zinc finger, C2H2
PROSITE patternPS000280545565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MSSMGVAAPP CEEIIYRSKL PDIDIPGHLP VHEYCFENLT AVADRPCIIN GQTGDVFTYA  60
EVELTARRVA AGLNRLGIRK GDVILALLPN SPEFVFTFLG ASFRGATTTT ANPFCTTAEI  120
QKQARAAGAR LVVTQSAYVD KVRELVQVAG VTIVCTDAHI EGCVHFSTLA GANAGEMAEV  180
EIRPDDVVAL PYSSGTTGMP KGVKLTHRGQ VTSVAQQVDG ANPNLWLRRD DVLLCVLPLF  240
HIYALNSVLL GGLRAGSAIL IVPKFDAVVL LDLIQRHRVT VAPLVPPILL ALSKRPDLGS  300
YDLSSIRIVM SGAAPMGKDL EDALSAKLPA AKVGQGYGMT EAGPVLSMCL AFARQPFKVK  360
SGSCGTVVRN AELKIIDPNT GESLPRNQAG EICIRGAQIM IGYLNDPEAT ARTIDEEGWL  420
HTGDVGYVDD DDEIFIVDRL KELIKYKGFQ VAPAELEALL VTHPGIDDAA VVPMKDDAAG  480
EVPVAFVVRS ESSAVSGNAI MEFISAQDME LERSGFLDLT LSVTDLELHL GAQPATQSPT  540
RVYSCNYCHR KFFSSQALGG HQNAHKRERS LAKKIRELRG RGAGHAAASG GCSRRSTFLF  600
TGRGVAVFND AAMFDGRESV GLSPGGAKPV RAWTGNCGVP EDKEEFDLCL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bsm_A0.01351895174-coumarate--CoA ligase 2
5bsm_B0.01351895174-coumarate--CoA ligase 2
5bsr_A0.01351895174-coumarate--CoA ligase 2
5bst_A0.01351895174-coumarate--CoA ligase 2
5bsu_A0.01351895174-coumarate--CoA ligase 2
5bsv_A0.01351895174-coumarate--CoA ligase 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265453.10.0PREDICTED: 4-coumarate--CoA ligase 2-like
SwissprotO241450.04CL1_TOBAC; 4-coumarate--CoA ligase 1
TrEMBLI6PD120.0I6PD12_9MAGN; 4-coumarate-CoA ligase
STRINGXP_010265453.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-17zinc finger protein 2
Publications ? help Back to Top
  1. Lee D,Douglas CJ
    Two divergent members of a tobacco 4-coumarate:coenzyme A ligase (4CL) gene family. cDNA structure, gene inheritance and expression, and properties of recombinant proteins.
    Plant Physiol., 1996. 112(1): p. 193-205
    [PMID:8819324]