PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0045200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 655aa    MW: 68871.8 Da    PI: 7.8229
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0045200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.8e-29230285359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg+nWrKYGqK+vk+ e++rsYY+Ct+++C +kkkver++ d++vvei+Y+g Hnh+
  Spipo12G0045200 230 DGFNWRKYGQKQVKSGENSRSYYKCTHSNCFAKKKVERCQ-DGHVVEIVYRGGHNHD 285
                      9***************************************.***************7 PP
2WRKY101.64.7e-32482539259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve+++ dpk+++itYegeH h+
  Spipo12G0045200 482 SDGYRWRKYGQKFVKGNPNPRSYYRCTQLGCPVRKHVEKDSVDPKAFIITYEGEHSHD 539
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-25218287IPR003657WRKY domain
PROSITE profilePS5081121.046223287IPR003657WRKY domain
SuperFamilySSF1182902.48E-23226287IPR003657WRKY domain
SMARTSM007741.5E-30228286IPR003657WRKY domain
PfamPF031069.7E-22230285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-33466541IPR003657WRKY domain
SuperFamilySSF1182905.36E-27476541IPR003657WRKY domain
PROSITE profilePS5081134.532476541IPR003657WRKY domain
SMARTSM007741.6E-37481540IPR003657WRKY domain
PfamPF031068.4E-26483539IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAEEPSSEAM EQAGQQEDAG EKPPSPLPSA SPPRKKRENT SSPAAAAAAD PTPAPPPASA  60
KGAGTKTSAL ETLAIPVPIT ANSGFLSNGS HGVVDCRSFS QLLAGAMASP VGNSRSTPIL  120
ALPVDAVRLP VVAVPCIIAP AALLESPGFA GQFAMTHQAV LATVTAHAQM QLQTGYTSPS  180
VISTISPLPL QQVPPSASED NGVSSVVEQS PSADQKLQTD RVALKTTSGD GFNWRKYGQK  240
QVKSGENSRS YYKCTHSNCF AKKKVERCQD GHVVEIVYRG GHNHDPPQKT KSPKERGPPS  300
SGHSGDNETL TPVISDANGP IHLASKASCR RPSNSNPPQK TKQLKERRPQ SIGSSGDNET  360
ITLASGDING SEPSPSKLEE NSGSDSSDRQ LARPSDRDGD ADIKNEEGPG DEPSPKRRLV  420
YSTFPSLVFK IFYSLISGMI FFYFNFFSKT MESPLTSPTP PSKTVKEQRV VIQKVSDGGL  480
VSDGYRWRKY GQKFVKGNPN PRSYYRCTQL GCPVRKHVEK DSVDPKAFII TYEGEHSHDR  540
PPPKHDGDPP ALLIAAAAAA AASGSAGGPP PAAPPSPPAD DGPKVESQPD VDSKSSEHGG  600
DQTLESAQTL LSMGLKPAAA AAAAGEESAD VKGSDAVPRP LFNKNRPAVP VQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27472541877Probable WRKY transcription factor 4
2lex_A3e-27472541877Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XTV71e-175A0A1D1XTV7_9ARAE; Putative WRKY transcription factor 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.29e-33WRKY DNA-binding protein 4