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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Spipo12G0038600 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 198aa MW: 21626.3 Da PI: 8.5133 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.7 | 0.00018 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C++C+ksFs+ L H + H
Spipo12G0038600 33 YLCQICSKSFSSAQALGGHKNAH 55
56************999998877 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 2.94E-6 | 30 | 59 | No hit | No description |
| Pfam | PF13912 | 1.2E-9 | 33 | 57 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.593 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 198 aa Download sequence Send to blast |
MAPPNRVEKM KVMARLQSQR SLRIRPSEEE PEYLCQICSK SFSSAQALGG HKNAHRRDRE 60 ETRKELAGAA PDASRPPPPP AGYPCMYLVA PQQAVFVPRR GFSHQVSGPG LVLPPGVWPS 120 KHFPVGEGSL TVKTAGFSRE ASSSSSKKPG AALHAEQGTR QVSHHSSQSV MMMPTFNHFH 180 NGNEEEEEDE PDLTLHL* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G27880.1 | 4e-09 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Spipo12G0038600 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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