PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0038200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 280aa    MW: 28909.9 Da    PI: 8.7282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0038200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-0884109227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt++C+++     Ck+Gd+C+FaHg+
  Spipo12G0038200  84 KTRICNNYKSPEGCKFGDKCHFAHGE 109
                      8***********************96 PP
2zf-CCCH37.53.9e-12246270126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+lC +fa+ G C +GdrC+FaHg
  Spipo12G0038200 246 YKTKLCENFAK-GPCTFGDRCHFAHG 270
                      9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.8361947IPR000571Zinc finger, CCCH-type
SMARTSM003563.51946IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-52045IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-72144IPR000571Zinc finger, CCCH-type
PfamPF146082.22444No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1479114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-881113IPR000571Zinc finger, CCCH-type
SMARTSM003560.003682109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.17382110IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-684109IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.04E-14140218IPR004088K Homology domain, type 1
SMARTSM003221.1E-11147217IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.108.5E-15148216IPR004088K Homology domain, type 1
PROSITE profilePS5008413.774148212IPR004088K Homology domain, type 1
PfamPF000134.9E-11150214IPR004088K Homology domain, type 1
CDDcd001051.35E-13150212No hitNo description
Gene3DG3DSA:4.10.1000.106.5E-17242276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-9244275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258245272IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7245271IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9246270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
FDLCFYACCE MQSIQPGVGS KSKPCTKFFS IAGCPFGEGC HFLHYVPGGI NAVAQMTNLG  60
NPSIPSRNPM APAHLDGPSP PAVKTRICNN YKSPEGCKFG DKCHFAHGER ELGKPIHSAH  120
GPGGGRSGGR VDPPPASGFG AAASFGASAT AKISVDASLA GAIIGKAGVN SKQICRLTGA  180
KLSIREHETD PGLRNIELEG TFDQIKQASA MVRELIVNIS SAMPSPLSKN GSAPAGQVAA  240
APGSNYKTKL CENFAKGPCT FGDRCHFAHG ASELRKAAV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805470.11e-136zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1D1YAL01e-137A0A1D1YAL0_9ARAE; Zinc finger CCCH domain-containing protein 14
STRINGXP_008805470.11e-136(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-52C3H family protein