PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0033100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 438aa    MW: 49171.8 Da    PI: 6.1785
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0033100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.31.8e-22131237185
         trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t 72 
                      +Wt+++v++Li+++  +e++   ++                     +kk++W+ vs+ m e+g+ +sp+qC++k+++lnkryk+++e+ +++ t
  Spipo12G0033100 131 KWTDEMVRLLITVVACVEDDGAPESgdalgkrkhgggggggaggvlQKKGKWKTVSRLMLEKGCYVSPQQCEDKFNDLNKRYKRLNEILGRGtT 224
                      7**************88888886555677778899999999***************************************************77 PP

         trihelix  73 sessstcpyfdql 85 
                      ++++++ +++d++
  Spipo12G0033100 225 CQVVENPALLDSM 237
                      *******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-19129264No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDSSMMGAGL LPAPSAGVLD LDPQVHQHHR QQQQQQPQQH HYQHHQLQAM ALGAEHHPQG  60
LLDPSSDSPS LIGAAQKGKG VPPSSGTLCN HHHLFQNGSD EEEERSLTNE DNGAEDLHGK  120
SKKGLPWQRM KWTDEMVRLL ITVVACVEDD GAPESGDALG KRKHGGGGGG GAGGVLQKKG  180
KWKTVSRLML EKGCYVSPQQ CEDKFNDLNK RYKRLNEILG RGTTCQVVEN PALLDSMPHV  240
PPKAKEDVRK ILSSKHLFYR EMCAYHNGQR LPHSHDLSSS QGGGCPQQHA AAGRYPGEED  300
AGSEEEDDEE DGDVEEKNAE FFARSSDSFQ AEIDGVFTDG TKSMWEQRDW IRKRTLQLQE  360
ERMEIQMKAF ELEKRRFKWQ RFCSKKDREL DRMKLENERM SLENQRMSLQ VKQREAELEF  420
NGAAEPIDSS GFGFIRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830974.11e-135PREDICTED: uncharacterized protein LOC108998738
TrEMBLA0A2I4FH561e-133A0A2I4FH56_JUGRE; uncharacterized protein LOC108998738
STRINGXP_008227154.11e-133(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1947058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-68sequence-specific DNA binding transcription factors