PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0015100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 472aa    MW: 50928.3 Da    PI: 6.1544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0015100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000313023521055
                      HHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIksLq 55 
                      + RR++i +++  L++l+P +s      ++ +   Ka +L + ++Y++sLq
  Spipo12G0015100 302 QLRREKISERMKFLQDLVPGCSkfglrFETLQVTGKAVMLDEIINYVQSLQ 352
                      77******************999*99866666799**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.318292351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-4298357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10302369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10302370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-5304356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERRNEENPL GFHGYMAADS FRPRLWDQPT TSQNSPFCDA TRGPSLAAPP RLEMGWNPPD  60
SIPRGGGGGC FGILPQSRPQ FPDDPAFIER AARFSSFSSF LPNTFRVNDP AGVYGAPPPQ  120
KGEAIAGETT QSVAASLDNG FNGGSPQKAR RDAGGEPEFS GGAPPETPNS DNTHDEPPSK  180
GPSTGAKKRK RGNQETETDQ GRAETQLSGE TSQENADGKQ RSEPKSSSSP AGKAGGKSSV  240
DGGGEAPKED YIHVRARRGQ ATNSHSLAER VSKLLREEQP DFPSASVSVS DPVDRRVALN  300
PQLRREKISE RMKFLQDLVP GCSKFGLRFE TLQVTGKAVM LDEIINYVQS LQRQVEFLSM  360
KLATVNPRLD FNIESLLSKE MLQPRGIPSS SFDFSPDLGH PQLHPPQQGM IQSGIPGLGN  420
PSEAHRRSMN AQLTANQMSG AWDEELHHVI QMGFGGSTHL GVQDLHGESA E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185191AKKRKRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028556766.11e-119transcription factor bHLH49 isoform X1
RefseqXP_028556767.11e-119transcription factor bHLH49 isoform X2
TrEMBLA0A1D1YGF01e-154A0A1D1YGF0_9ARAE; Transcription factor bHLH49
STRINGXP_008243775.11e-110(Prunus mume)
STRINGXP_008788970.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-67bHLH family protein