PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0001200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 297aa    MW: 32309.5 Da    PI: 7.4754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0001200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.41e-12100124226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG+C yG++C+F+H+
  Spipo12G0001200 100 DEPNCSYYMRTGQCGYGNNCRFNHP 124
                      689*********************8 PP
2zf-CCCH38.61.9e-12142167227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+ff++tGtCkyG +Ck++H++
  Spipo12G0001200 142 GQPDCQFFLKTGTCKYGVTCKYHHPR 167
                      6799********************96 PP
3zf-CCCH29.51.2e-09190212527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C++++r+G Ck+G  CkF+H++
  Spipo12G0001200 190 SCPYYMRNGSCKFGFACKFHHPE 212
                      6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.42798126IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-598125IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6102125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5104123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309140168IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-7140167IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5146167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6184213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042185213IPR000571Zinc finger, CCCH-type
SMARTSM003560.005187212IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7189212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4190211IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MREAAGLLLL GSWESCEGSG RGGIQFLIGS GRKAEDRANF LLVVEGRMLD DGRSQNPGNA  60
VASSFTASSE NLEEFMWRLN IKDNQGEQDA NANPYPDRPD EPNCSYYMRT GQCGYGNNCR  120
FNHPAPVGKG TYHGGRLPER EGQPDCQFFL KTGTCKYGVT CKYHHPRDRV MAVHVPLNML  180
GLPMRQEEKS CPYYMRNGSC KFGFACKFHH PEPAMGSVFH DAAPSVYGSS GAAMASQSVL  240
PFVGGISSWP PLPQSPYVTT PNLHGLPAFL PMIISPSHNV VAAQPAWSTY AVVANL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270053.11e-100PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1
TrEMBLA0A1D1XMR01e-113A0A1D1XMR0_9ARAE; Zinc finger CCCH domain-containing protein 3
STRINGXP_010270053.12e-99(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-60C3H family protein