PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo12G0001100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 209aa MW: 22591 Da PI: 6.4965 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 45 | 70 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG+ Ck++H++ Spipo12G0001100 45 DQPECQYYLKTGRCKYGPACKYHHPK 70 689*********************96 PP | |||||||
2 | zf-CCCH | 33.6 | 6.4e-11 | 90 | 115 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++ +G CkyG+ CkF H+ Spipo12G0001100 90 PGQAVCTFYRTYGSCKYGSACKFDHP 115 57899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.0E-5 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.615 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-7 | 46 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 49 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.849 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-5 | 94 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MTFVIYLNQG AMNSSDVRGQ DHLPNSNPQM QSGSILQASF PERPDQPECQ YYLKTGRCKY 60 GPACKYHHPK EKIASSNPGP IGPHMLPLRP GQAVCTFYRT YGSCKYGSAC KFDHPYAWPG 120 YYGYTAYPAL STWDPSSLPF ERSSSMNRTS PGTAAPEALK VAGGFPNPEM ASNEQTGADP 180 DSLEDQPPQA ISPSQTAPSS GSTQDHSD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270054.1 | 9e-48 | PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2 | ||||
TrEMBL | A0A1D1ZLZ3 | 2e-79 | A0A1D1ZLZ3_9ARAE; Zinc finger CCCH domain-containing protein 12 (Fragment) | ||||
STRING | XP_010270053.1 | 5e-46 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20382 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 4e-28 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo12G0001100 |