PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0058400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 27508.7 Da PI: 8.2153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Spipo11G0058400 109 YECKTCNKCFPSFQALGGHRASH 131 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Spipo11G0058400 170 HECSICGAEFSSGQALGGHMRRH 192 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.51E-9 | 108 | 131 | No hit | No description |
Pfam | PF13912 | 8.3E-12 | 108 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.759 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.082 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.51E-9 | 165 | 192 | No hit | No description |
Pfam | PF13912 | 2.4E-13 | 169 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.993 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
NNSSSGVSND YSRGIAKGKR TRRQRFQLLV APAATATPST SSSGEFYGSA GEEDDEEDMA 60 NCLILLAQGR ALEDSPPKPE GEGGGGKFNS RRLAEAATTT NGKAGFYVYE CKTCNKCFPS 120 FQALGGHRAS HKKPKPEEKK GIADEYSHSF PIPAASSPKS TFPNHKPRVH ECSICGAEFS 180 SGQALGGHMR RHRAAAAAAA GVVSEDQEIK KEKTILCLDL NLPAPSEDER GELPKSPAFA 240 FSGKQAIVFS ASALVGCHY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935821.1 | 1e-96 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A2H3XQY6 | 5e-88 | A0A2H3XQY6_PHODC; zinc finger protein ZAT5 | ||||
STRING | XP_008787454.1 | 8e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-47 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0058400 |