PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo11G0057400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 27777.6 Da PI: 9.3641 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Spipo11G0057400 73 YTCSFCKREFRSAQALGGHMNVH 95 9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.72E-6 | 70 | 100 | No hit | No description |
Pfam | PF13912 | 1.7E-6 | 73 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.24 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0038 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0009755 | Biological Process | hormone-mediated signaling pathway | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MGFSISIAVS PLGARLSGGR RISMERRIRD EHCNSNYSAI PKEPWRNGCL GGPAGDCTPG 60 NLFLGLSWPP RSYTCSFCKR EFRSAQALGG HMNVHRRDRA RMRESPPWEP PPCSNPDPIP 120 NPKPTPNRIL LLNLNSEPDP TYEDDLPAPR MPSSPICSLS HRSSSTSKKS SSEAFPSEPR 180 ESKNRKIAKA HCEVSGEKDH PAKDPTCKVL KRKKGDRGLH LEIEIKSADK EKLDLDLRLG 240 VVNYFDLPSS * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-13 | 68 | 95 | 2 | 29 | superman protein |
2l1o_A | 1e-13 | 68 | 95 | 2 | 29 | Transcriptional regulator SUPERMAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23130.1 | 1e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo11G0057400 |