PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0044200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 714aa    MW: 78887.6 Da    PI: 6.6172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0044200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06122145626
                      -SGGGGTS...--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartG...tCkyGdrCkFaHg 26 
                      C+  a+tG    C++G++C+F+H+
  Spipo11G0044200 122 CPEIAKTGkveACRFGASCRFSHD 145
                      555578999999***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.845116147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.4E-70357600IPR013785Aldolase-type TIM barrel
SuperFamilySSF513956.72E-61361674No hitNo description
CDDcd028011.49E-88361596No hitNo description
PfamPF012078.1E-48364598IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360445463IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MEILDGTPTE GGTVVGDQEK PAGGGEGEAP ESAGLRRDAA HPKPEDLVAR AIAPVKAEYV  60
RPSRSRPSSD AGERKGDGWI PAGDGEKSAL APSAPVVVAE KKSKRQLKRE RQQEQKSARN  120
ICPEIAKTGK VEACRFGASC RFSHDLEGFL DQKPEDLPGV CPFLNTAQPC PYGIACRLFG  180
THKEFAPLRT SDDPPKKHGV ELNSLNKDFQ RLLWKNRVKF PKADAQLKIL GLSGGKNFKA  240
KPEIDLEEHP VVLDGSNDCD DATKGASCHS AAGDDEDRPE ICLGNEIVED ESIIDDPRPP  300
KKTKSPIDDN MCSAEVINGF EEKPLQMECK ETQMKPCSGT RVELIPELNG REKKLIDFRG  360
KLYLAPLTTV GNLPFRRVCK GLGADITCGE MAMCTNLLQG QASEWALLRR HRSEDTFGVQ  420
ICGSYPDTIA RTVELIEREC TVDFIDINMG CPIDVVVNKG AGSSLLTKPM RMKNIARAAC  480
GTSDIPLTLK VRTGYFEGRN RIDSLIADMG QWGPCALTIH GRSRQQRYSK LADWDYIYQC  540
ASKAPSNLQV LGNGDIFSYV DWNKHTADCP QLSSCMIARG ALIKPWIFTE IKEQRHWDIS  600
SGERLGILKD FVNFGLEHWG SDNKGVETTR HFLLEWLSYT HRYVPVGLLE VVPQRLNWRP  660
PSYFGRDDLE TMMASDSAAD WIRISEMLLG KVPAGFSFAP KHKSNAYDRA ENG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2735860527266tRNA-dihydrouridine synthase B
6ei9_B1e-2735860527266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781781.30.0LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A1D1XWR10.0A0A1D1XWR1_9ARAE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] (Fragment)
STRINGXP_008781781.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]