PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0036600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 326aa    MW: 35650 Da    PI: 9.7077
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0036600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.76.4e-3075167189
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+kv tpsdv+k++rlv+pk++ae+h    g+ ++++ +l + d+sg+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +   ++
  Spipo11G0036600  75 FDKVVTPSDVGKLNRLVIPKQHAERHfpldGSTNQNGLQLGFVDPSGKPWRFRYSYWNSSQSYVITKGWSRFVKEKRLRAGDTVSFWRGAGEG 167
                      89***************************9777778899***********************************************8653343 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-4170183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-3171178IPR015300DNA-binding pseudobarrel domain
CDDcd100175.44E-2973162No hitNo description
PfamPF023623.1E-2675167IPR003340B3 DNA binding domain
SMARTSM010192.6E-2275175IPR003340B3 DNA binding domain
PROSITE profilePS5086314.29775177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MESARAGEEK HLPEEQDPEK QHSHSRRPTF ALSPPPSSSS SSSSTRWTPP QSESAGDHHP  60
SVSGSCISPE KEFMFDKVVT PSDVGKLNRL VIPKQHAERH FPLDGSTNQN GLQLGFVDPS  120
GKPWRFRYSY WNSSQSYVIT KGWSRFVKEK RLRAGDTVSF WRGAGEGGRQ MFFIDWKRLP  180
DKQDLQSPSS FMSFSRAGVP WPPLISPPST SDGGPNRHLG YSYQPAAAAA ESNPYLCYKS  240
MAVQLGVGSG GRVGDSVIDS FPVVNGNPLA KRVRLFGVNL DCSPEKVDPD GNVSVRSRLP  300
PLAPPSLRLI AGGSEMVGLQ MKDLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-52691802114B3 domain-containing transcription factor NGA1
5os9_B3e-52691802114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697228.12e-72B3 domain-containing protein Os02g0683500-like
SwissprotQ8LMR92e-64Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1D1ZE212e-71A0A1D1ZE21_9ARAE; B3 domain-containing protein Os03g0120900
STRINGXP_008783755.11e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]