PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0034800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 378aa    MW: 40766.3 Da    PI: 8.2195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0034800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C ++Fs+   L  H+r+H
  Spipo11G0034800  4 HTCKLCFRRFSNGRALGGHMRSH 26
                     79********************9 PP
2zf-C2H212.40.00047210232123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  Spipo11G0034800 210 YQCGTCKKVFRSYQALGGHRASH 232
                      9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-5426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286431IPR007087Zinc finger, C2H2
SMARTSM003550.13426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139121.7E-10209233IPR007087Zinc finger, C2H2
SuperFamilySSF576679.28E-8209232No hitNo description
SMARTSM003550.098210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.284210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
SuperFamilySSF576679.28E-8279306No hitNo description
PfamPF139121.5E-11284308IPR007087Zinc finger, C2H2
SMARTSM003550.44284306IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515284311IPR007087Zinc finger, C2H2
PROSITE patternPS000280286306IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEKHTCKLCF RRFSNGRALG GHMRSHVTAA APTGAPKLQG VLVAGSDDGK QFVYYGLREN  60
PRKSFRLVDP EFSSAFQAVD YVAAGGSSIV LQDRESETES SKPPSLRRRS KRRRRTSHPP  120
PTTQPEPSFD PEPVSSVSNS TPEEDVARCL MMLSRDVWNN GSSPEKKPKY SSRGRPAAEE  180
AAAEHRQSDD DSEEELTTVA KSRRGGRSRY QCGTCKKVFR SYQALGGHRA SHKNVKACVA  240
PAAVAGEDEE EEKDVRPQAE NQIQEVDSEV NFAPSTGSTD RRIHECPVCF RVFGSGQALG  300
GHKRSHLAQS SSSMNPSPVK VAPTVVATKK ATATAASAVS PVLGYGGRTL VGESLIDLNL  360
PPPADEEGEL SAVFDAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919568.11e-88LOW QUALITY PROTEIN: zinc finger protein ZAT4
TrEMBLA0A1U7ZWR31e-86A0A1U7ZWR3_NELNU; zinc finger protein ZAT1-like
STRINGXP_010258927.12e-87(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-40C2H2-like zinc finger protein