PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0028200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 236aa    MW: 25403.1 Da    PI: 4.9901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0028200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-1950100155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr+++  g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Spipo11G0028200  50 PVYRGVRRRS-AGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAMALRG 100
                      68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1450100IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2151110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-3251110IPR001471AP2/ERF domain
PROSITE profilePS5103222.85351108IPR001471AP2/ERF domain
SMARTSM003803.2E-3051114IPR001471AP2/ERF domain
PRINTSPR003673.8E-95263IPR001471AP2/ERF domain
CDDcd000183.27E-2852110No hitNo description
PRINTSPR003673.8E-97490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSGYSTEMDS PSGGTAQSGG SDEEVYYATV SSAPPKRRAG RTKFRETRHP VYRGVRRRSA  60
GKWVCEVREP NKKSRIWLGT FPTAEMAARA HDVAAMALRG RSACLNFADS AWRLPVLPGS  120
ATAREIQQAA AKAVQTFRPE GTGADEGGAV GTPSSDTADT ADTADTADTT PPPAEAPASE  180
LEVGYLDLDF GLEDYLANMR MLSPLHPIQM HHHWGEGIWD DVEAESDVSL WSYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14491071271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255545.11e-70PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLQ0ZDG83e-70Q0ZDG8_9LILI; CBF-like transcription factor 1
STRINGXP_010255545.14e-70(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-47C-repeat/DRE binding factor 2