PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo11G0013700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Trihelix

Protein Properties

Length: 328aa MW: 36278.2 Da PI: 10.468

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo11G0013700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.5	5.3e-21	31	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkr.t..sessstcpyf 82 +Wt++e+ aLi+a+re++ +lrrg+l++ +Weev++ + + +gf ++++qC++k e+l++ry+++k++ r + +++ s+++yf Spipo11G0013700 31 CWTHDETVALIDAYREKWYALRRGNLRASHWEEVADGVrdrcqsvgaATTGF-KTAVQCRHKVEKLRQRYRAEKQRLALRgNsgKPRFSSWVYF 123 8***************************************9999555555.79****************998875323455679 PP trihelix 83 dqle 86 ++++ Spipo11G0013700 124 RKMD 127 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-21	30	129	No hit	No description
SMART	SM00595	3.5E-6	39	130	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGTSPEPETA QRPPMVSSLS SASSRRLVTP CWTHDETVAL IDAYREKWYA LRRGNLRASH 60 WEEVADGVRD RCQSVGAATT GFKTAVQCRH KVEKLRQRYR AEKQRLALRG NSGKPRFSSW 120 VYFRKMDSME LGSTAGDGAV LSSAPLSSSS DDGKDDHNVI AGNPKGSAPI FQRFNSKDGE 180 VGEVGSSLVS DGLKFRIPRA LRSKVSGTRP DERTNAPVGA GKPKLGNGFF NGFSGPPRPS 240 GVEEIGEGEQ KQKKGSIVWE MVAAVKMLGD EFTRIEEMKM KMARDMEKVR REMELKRTKM 300 ILDSQRQIVD YIRGLQEKNG AKVNPKQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794930.1	7e-71	trihelix transcription factor ASIL2-like
TrEMBL	A0A1D1Z9Y0	3e-98	A0A1D1Z9Y0_9ARAE; Uncharacterized protein (Fragment)
STRING	XP_008794930.1	3e-70	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	7e-33	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Spipo11G0013700