PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0003000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HB-other | ||||||||
Protein Properties | Length: 116aa MW: 13151.9 Da PI: 9.7857 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.7e-09 | 14 | 75 | 7 | 56 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 f ++++ e+e++ ++ n+ p++e + LA++ ++ +qV +WFqNrR+ ++ Spipo11G0003000 14 FIPSEVMEMEACLQEtnNSLPDREVISTLAERFsasaeragkvIIQPKQVWNWFQNRRYAQR 75 66788999999999666999*********************999**************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.54E-11 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.1E-4 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.572 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.08E-5 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 14 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.2E-6 | 14 | 75 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MGRPPNGGGP AFRFIPSEVM EMEACLQETN NSLPDREVIS TLAERFSASA ERAGKVIIQP 60 KQVWNWFQNR RYAQRAKMVK VPGKLNVSPS WDDSFQFRNV HASHSLGPWE LYWST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008805939.1 | 6e-46 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X3 | ||||
Swissprot | Q8RWJ7 | 2e-34 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1D1Y073 | 3e-47 | A0A1D1Y073_9ARAE; Homeobox-leucine zipper protein HOX22 | ||||
STRING | XP_008805937.1 | 3e-45 | (Phoenix dactylifera) | ||||
STRING | XP_010275166.1 | 4e-45 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 9e-37 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0003000 |