PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo11G0001000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family FAR1
Protein Properties Length: 820aa    MW: 92285.1 Da    PI: 6.625
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo11G0001000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.21.6e-2972161290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      fY +YA+++GFsvr+sks++s+++++i++r+fvCskeg++++++++ + k+rr+ra+ r gC+a+++v +++ g+w+vtk+++eHnH++ 
  Spipo11G0001000  72 FYMAYASRLGFSVRISKSRRSRNDESIIMRRFVCSKEGFHTKKDSAdDGKKRRKRATIREGCQAMIEVIQKYYGRWVVTKFVKEHNHAVL 161
                      9**************************************99998875789999**********************************976 PP

2FAR177.23.3e-24194289290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                      fY +YA++vGF+vr++ s++s+r++++++r+fvC+keg++  e++          k+rr+r+ tr gCka+++v k++ ++w+v+kl+l H+He
  Spipo11G0001000 194 FYYAYASRVGFDVRIRLSRRSTRDESFVMRRFVCTKEGFTPYEENFddgggggGGKRRRNRTPTREGCKAMFEVIKKDYDRWVVSKLVLVHTHE 287
                      9***************************************99988899****9999************************************** PP

             FAR1  89 la 90 
                      la
  Spipo11G0001000 288 LA 289
                      96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-2872161IPR004330FAR1 DNA binding domain
PfamPF031013.3E-21194289IPR004330FAR1 DNA binding domain
PfamPF105517.3E-17429520IPR018289MULE transposase domain
PfamPF044345.9E-8703740IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.151706744IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-4719746IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MESSSSEEDG SMRDGMDLNE ENLLEHRMAF DAGGPALDEN GGGQVAPHHE GVEGLEPFVG  60
MEFESEEAAK LFYMAYASRL GFSVRISKSR RSRNDESIIM RRFVCSKEGF HTKKDSADDG  120
KKRRKRATIR EGCQAMIEVI QKYYGRWVVT KFVKEHNHAV LPPSRVRYVA PEEYADLEPF  180
IGMEFPTHED AQTFYYAYAS RVGFDVRIRL SRRSTRDESF VMRRFVCTKE GFTPYEENFD  240
DGGGGGGGKR RRNRTPTREG CKAMFEVIKK DYDRWVVSKL VLVHTHELAV APSRVHYIQS  300
QSEVVVLAKS GGGAPRETAS ALNSLASQIG EAGRGAFDHH HQHHHHHHHP PPAGGEQEAG  360
NDAREAAGQS SFVIGVEETQ SLLDYFKRLQ DENPAFFYAF QVDKNDCLTS VFWADAKARM  420
SYYCFGDAVT FDSSFLGDKS MLPFVTFTGV NHHLQSVIFG SALLTCDSEA ALVWVFENWL  480
LAMCSRPPAS LVTDHSEVLG AAAGKVFPST RHRISKWSIL ARTRENLSNV YSKHATFQAD  540
LESCVLASET VEAFEAGWSS ILDRYGLREN PWLQSVYGLR HQWVSVYTKD AFSAEISATR  600
RPEGLSRFYE KYFNTRTSLL VFVSLFEQAV SCWYENEALE DFANMYTKPI LKTPSLLLKQ  660
AAEFYTRAIF DVFQDEFIES LGYHVDRVED GEVCKYSVAK EGDARTTCAV TYISSEKKAS  720
CSCCKFEVSG ILCRHILRVL PIVGVCALSE EYILKRWTKN AKNGFVLDEC VRYNDICRDA  780
TKYAKEGSSS MEVYKVAKEA LQMAFAEVVA AKKSIGCTM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380060.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1D1XEM20.0A0A1D1XEM2_9ARAE; Protein FAR1-RELATED SEQUENCE 5
STRINGOB03G39100.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-148FAR1-related sequence 5