PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo11G0001000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | FAR1 | ||||||||
Protein Properties | Length: 820aa MW: 92285.1 Da PI: 6.625 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94.2 | 1.6e-29 | 72 | 161 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GFsvr+sks++s+++++i++r+fvCskeg++++++++ + k+rr+ra+ r gC+a+++v +++ g+w+vtk+++eHnH++ Spipo11G0001000 72 FYMAYASRLGFSVRISKSRRSRNDESIIMRRFVCSKEGFHTKKDSAdDGKKRRKRATIREGCQAMIEVIQKYYGRWVVTKFVKEHNHAVL 161 9**************************************99998875789999**********************************976 PP | |||||||
2 | FAR1 | 77.2 | 3.3e-24 | 194 | 289 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA++vGF+vr++ s++s+r++++++r+fvC+keg++ e++ k+rr+r+ tr gCka+++v k++ ++w+v+kl+l H+He Spipo11G0001000 194 FYYAYASRVGFDVRIRLSRRSTRDESFVMRRFVCTKEGFTPYEENFddgggggGGKRRRNRTPTREGCKAMFEVIKKDYDRWVVSKLVLVHTHE 287 9***************************************99988899****9999************************************** PP FAR1 89 la 90 la Spipo11G0001000 288 LA 289 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-28 | 72 | 161 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.3E-21 | 194 | 289 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.3E-17 | 429 | 520 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 5.9E-8 | 703 | 740 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.151 | 706 | 744 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.0E-4 | 719 | 746 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MESSSSEEDG SMRDGMDLNE ENLLEHRMAF DAGGPALDEN GGGQVAPHHE GVEGLEPFVG 60 MEFESEEAAK LFYMAYASRL GFSVRISKSR RSRNDESIIM RRFVCSKEGF HTKKDSADDG 120 KKRRKRATIR EGCQAMIEVI QKYYGRWVVT KFVKEHNHAV LPPSRVRYVA PEEYADLEPF 180 IGMEFPTHED AQTFYYAYAS RVGFDVRIRL SRRSTRDESF VMRRFVCTKE GFTPYEENFD 240 DGGGGGGGKR RRNRTPTREG CKAMFEVIKK DYDRWVVSKL VLVHTHELAV APSRVHYIQS 300 QSEVVVLAKS GGGAPRETAS ALNSLASQIG EAGRGAFDHH HQHHHHHHHP PPAGGEQEAG 360 NDAREAAGQS SFVIGVEETQ SLLDYFKRLQ DENPAFFYAF QVDKNDCLTS VFWADAKARM 420 SYYCFGDAVT FDSSFLGDKS MLPFVTFTGV NHHLQSVIFG SALLTCDSEA ALVWVFENWL 480 LAMCSRPPAS LVTDHSEVLG AAAGKVFPST RHRISKWSIL ARTRENLSNV YSKHATFQAD 540 LESCVLASET VEAFEAGWSS ILDRYGLREN PWLQSVYGLR HQWVSVYTKD AFSAEISATR 600 RPEGLSRFYE KYFNTRTSLL VFVSLFEQAV SCWYENEALE DFANMYTKPI LKTPSLLLKQ 660 AAEFYTRAIF DVFQDEFIES LGYHVDRVED GEVCKYSVAK EGDARTTCAV TYISSEKKAS 720 CSCCKFEVSG ILCRHILRVL PIVGVCALSE EYILKRWTKN AKNGFVLDEC VRYNDICRDA 780 TKYAKEGSSS MEVYKVAKEA LQMAFAEVVA AKKSIGCTM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 124 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380060.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1D1XEM2 | 0.0 | A0A1D1XEM2_9ARAE; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | OB03G39100.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-148 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Spipo11G0001000 |