PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0049500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family E2F/DP
Protein Properties Length: 393aa    MW: 43324.9 Da    PI: 7.2673
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0049500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.16.1e-231277171
          E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                     rkeksL+ll+++f++l+ +   + v l+++a +L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  Spipo10G0049500 12 RKEKSLGLLCSNFISLYDRDGVDSVGLDDAAARL---GV--ERRRIYDIVNVLESVGVLSRKAKNRYSWIG 77
                     79*****************999************...**..****************************98 PP
2E2F_TDP71.78.3e-23153235171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.......dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ +s+ ++++l+e+a+ L+ +       +   k+RR+YDi+NVL++l+liek     ++k+++rw g
  Spipo10G0049500 153 RKEKSLGLLTQSFVKLFLTSNVETISLDEAARLLLGDgdssmmrNNAAKVRRLYDIANVLSSLKLIEKtqnseSRKPAFRWLG 235
                      79***************************************99966689*******************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-26878IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.56E-161176IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.4E-281277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-201377IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-23151236IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-28153235IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.9E-19154235IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.16E-12155236IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEVGIRVQNY SRKEKSLGLL CSNFISLYDR DGVDSVGLDD AAARLGVERR RIYDIVNVLE  60
SVGVLSRKAK NRYSWIGFSG IPQTLTDLKQ EAMREISGCP TPNASSYKGE SDDEEEDKPS  120
HHAPGSGADP ADIPPKVAPD SAPWKPRSVM ENRKEKSLGL LTQSFVKLFL TSNVETISLD  180
EAARLLLGDG DSSMMRNNAA KVRRLYDIAN VLSSLKLIEK TQNSESRKPA FRWLGMEGKS  240
THAAAAAAAP TAKQWNKRAF GTDVTNTDLK KSKLVPLVEG KPRKVVKTRS EDLKECNLTA  300
QMQLQGSKVH AFGPFCPTGV AKGEHEPNGA DEEKALLDWE AMAASFHPQY HNQALSELFA  360
HYMEAWKSWY IELAQDSNSL ELLSQQMSNH GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-38112273228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798029.11e-162E2F transcription factor-like E2FE
TrEMBLA0A2H3YFG21e-161A0A2H3YFG2_PHODC; E2F transcription factor-like E2FE
STRINGXP_008798029.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-100DP-E2F-like 1