PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo10G0047700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 441aa MW: 49248.7 Da PI: 6.8697 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 165 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +L++H r H Spipo10G0047700 165 YVCGVCGRKCRTHADLRKHFRQlH 188 9******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 6.4E-6 | 80 | 154 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 11.448 | 165 | 193 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0083 | 165 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 167 | 188 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 6.01E-12 | 179 | 318 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 6.4E-6 | 251 | 307 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MRPLLLGPPA SFHPTLPRST ATLPPLSPAL RGGGGRFALR IAAARSGGFP PASSAAAAPV 60 EVEMVRGGDG VWSSAAEEKK KKAEEKKVVV LWDLDNKPPR GPPYEAAVAL RQLAGLFGRV 120 LEVSAYANRH AFHHLPQWVL EQRRERRLLE QMERKGLAPA PAEPYVCGVC GRKCRTHADL 180 RKHFRQLHER ERQKKLARMR SLKSPKKRRS YRERFITGNA KYEEAARDLL KPKVGYGLAS 240 ELRRAGVFVK MVADKPQAAD AALKRQVHHS MARGIDWLFL VSDDSDFSEM LRRARESDMR 300 TVVVGDGRTA LSREADLWFP WMGVENGDVG EEMALGGRPL AAGEMELSFS FSEEEPPDPP 360 LRSDWSELAS VVDEIVAGRS DRGRRRVSVF SDEEGLELSD GDDLDDDDDF FRLYGSTVVP 420 REQQHLTWDS EDEEEDDGYV * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009413681.1 | 1e-154 | PREDICTED: uncharacterized protein LOC103994941 | ||||
Refseq | XP_009413682.2 | 1e-154 | PREDICTED: uncharacterized protein LOC103994941 | ||||
Refseq | XP_009413683.2 | 1e-154 | PREDICTED: uncharacterized protein LOC103994941 | ||||
Refseq | XP_018685199.1 | 1e-154 | PREDICTED: uncharacterized protein LOC103994941 | ||||
TrEMBL | A0A2I0W7Z5 | 1e-143 | A0A2I0W7Z5_9ASPA; Uncharacterized protein | ||||
STRING | XP_008776526.1 | 1e-142 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9806 | 32 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-115 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo10G0047700 |