PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo10G0047600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 125aa MW: 13558.2 Da PI: 9.8561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.6 | 7.3e-14 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +k+g+WvAeIr+p +kr r++lg++ ++ Aaka++ a +l+g Spipo10G0047600 2 RKWGKWVAEIREP---NKRSRIWLGSYSSPVAAAKAYDTAVYYLRG 44 46**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-24 | 1 | 53 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.927 | 1 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-28 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.09E-21 | 1 | 53 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-17 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-7 | 2 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MRKWGKWVAE IREPNKRSRI WLGSYSSPVA AAKAYDTAVY YLRGRSARLN FPNELPPSSP 60 ADDRCGGGEE LSAALIRQKA TEVGARVDAL HSAGQLGEPP ARISAPKNPD LNRRPSPESS 120 DTEL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00401 | DAP | Transfer from AT3G50260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 1e-43 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AK107775 | 1e-43 | AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence. | |||
GenBank | AP002536 | 1e-43 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 1e-43 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 1e-43 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648850.1 | 4e-48 | ethylene-responsive transcription factor RAP2-9 | ||||
Swissprot | Q9SNE1 | 4e-41 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A1D6LLJ9 | 9e-47 | A0A1D6LLJ9_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
TrEMBL | A0A1E5VTH6 | 1e-46 | A0A1E5VTH6_9POAL; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A3L6EF16 | 9e-47 | A0A3L6EF16_MAIZE; Ethylene-responsive transcription factor ERF008 | ||||
STRING | Pavir.J20437.1.p | 7e-48 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 2e-43 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo10G0047600 |
Publications ? help Back to Top | |||
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