PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0047500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 395aa    MW: 42354.1 Da    PI: 6.5192
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0047500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10100130136
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkf 36 
                      s+y+GV++++++grW+++I+d      + k+++lg+f
  Spipo10G0047500 100 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGNF 130
                      78*******************......55******99 PP
2AP241.72.9e-13219269155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+ +k  g+W+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Spipo10G0047500 219 SKFRGVTLHK-CGKWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 269
                      79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.631101184IPR001471AP2/ERF domain
SMARTSM003802.3E-22101190IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-7152185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-8155184IPR001471AP2/ERF domain
CDDcd000183.81E-25219279No hitNo description
PfamPF008471.1E-8219269IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-17219279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-16220278IPR001471AP2/ERF domain
SMARTSM003803.6E-33220283IPR001471AP2/ERF domain
PROSITE profilePS5103215.396220277IPR001471AP2/ERF domain
PRINTSPR003676.9E-6221232IPR001471AP2/ERF domain
PRINTSPR003676.9E-6259279IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MATAGSPSTE KEDESENSGS VVVVEDDEAV GGGSSSRCRI FGFSVHSAGE MPGAAKQSLE  60
EQPEALVTHQ FFPETVLAAG VAAGGVAMKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  120
CGKQVYLGNF PANLMIISRS SPPHSSPWMI SITTGGFDTA HAAARAYDRA AIKFRGVDAD  180
INFNLEDYEE DLQQMGNLSK EEFVHVLRRQ STGFPRGSSK FRGVTLHKCG KWEARMGQFL  240
GKKYVYLGLF DTEVEAARAY DKAAIKCNGR DAVTNFDLSS YENELSSAVG GEVNDLDLSL  300
GGSGSKSSSS LSEADNGING RGPTTKYEHG TGYYYYGEPP PPPPPPPLPL NQFIVRPFGP  360
SGFPQVGAPP VWGGDQQLQR GLQVAGYGGA AGGI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263848.11e-109PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotB8B0I83e-95AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A4D6IX281e-113A0A4D6IX28_PERAE; APETALA 2
STRINGXP_008788845.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-89AP2 family protein