PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo10G0007900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 279aa    MW: 30311.9 Da    PI: 8.2255
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo10G0007900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-16242278135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  Spipo10G0007900 242 CHHCGISSkaTPMMRRGPNGPRTLCNACGLMWANKGQ 278
                      *****9999************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.393106141IPR010399Tify domain
SMARTSM009792.2E-10106141IPR010399Tify domain
PfamPF062001.9E-12111140IPR010399Tify domain
PfamPF062032.2E-16167209IPR010402CCT domain
PROSITE profilePS5101713.334167209IPR010402CCT domain
SMARTSM004016.0E-6236278IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-9240277No hitNo description
Gene3DG3DSA:3.30.50.106.3E-14241277IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.48E-13241277No hitNo description
PfamPF003204.1E-14242278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440242269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSENPAKGGL YPERHIHAQV NAAASMQLPV QIDEVHGGDG GGGYVISDQQ MLVRQDTQGQ  60
SYGAVQDHGV HQKYGGDGME DQNGVERDAM EGDMPSDAGN MALIPDPGMG NQLTLSFQGE  120
VYVFDSVSPE KVQAVLLLLG GRELNTGVAS IQSSSHQSNK RSNFPQRVAS LMRFREKRKE  180
RNFDKKIRYT VRKEVALRMQ RNKGQFTSSK SKPEDAALGV TSWDSTQCWG AEDSRPQAAS  240
SCHHCGISSK ATPMMRRGPN GPRTLCNACG LMWANKGQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811434.11e-115GATA transcription factor 20-like
SwissprotQ5Z4U59e-90GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1D1ZFB11e-139A0A1D1ZFB1_9ARAE; GATA transcription factor 28
STRINGXP_008811434.11e-114(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-85ZIM-LIKE 2