PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0181800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 174aa MW: 19746.8 Da PI: 10.6211 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.3e-06 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Spipo0G0181800 59 FICEVCNKGFQREQNLQLHRRGH 81 89*******************88 PP | |||||||
2 | zf-C2H2 | 17.1 | 1.6e-05 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+Lk H +++ Spipo0G0181800 135 WKCDKCSKRYAVQSDLKAHSKVC 157 58*****************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.07E-8 | 58 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 58 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.0E-6 | 59 | 81 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.8E-6 | 123 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.07E-8 | 130 | 155 | No hit | No description |
PROSITE profile | PS50157 | 8.642 | 135 | 163 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 62 | 135 | 155 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MQQQQKRSLS TTTSSAAAAA AAPPPAPPPK KKRNQPGTPN PDAEVIALSP KTLMATNRFI 60 CEVCNKGFQR EQNLQLHRRG HNLPWKLRQK STKEVRQRVY LCPEPTCVHH DPSRALGDLT 120 GIKKHFCRKH GEKKWKCDKC SKRYAVQSDL KAHSKVCGTR EYRCDCGTLF SRRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-21 | 131 | 174 | 3 | 46 | Zinc finger protein JACKDAW |
5b3h_F | 4e-21 | 131 | 174 | 3 | 46 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008811075.1 | 1e-105 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_008811077.1 | 1e-105 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_017701960.1 | 1e-105 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_017701961.1 | 1e-105 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_026666290.1 | 1e-105 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | Q8GYC1 | 1e-101 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A2H3ZAW8 | 1e-104 | A0A2H3ZAW8_PHODC; protein indeterminate-domain 5, chloroplastic-like | ||||
STRING | XP_008811073.1 | 1e-105 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-99 | indeterminate(ID)-domain 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0181800 |
Publications ? help Back to Top | |||
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