PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo0G0180300

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 294aa MW: 30637.2 Da PI: 8.4825

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo0G0180300	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Spipo0G0180300 69 PEAALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	53	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.9E-33	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MVFSSVPTYL DPPNWNQPQS GHHQRATGGG GGGGGAGGEA TQLPPTAGPS SARPCSMAER 60 ARLAKMAQPE AALKCPRCDS TNTKFCYFNN YSLTQPRHFC KTCRRYWTRG GALRNVPVGG 120 GCRRNKRSKS TGGGGGGSRN SGGSSAGGGG AITPSFQPPP QLPFMPPLQP LVDYELHFPL 180 DTVDFQLGGS GGVGLEQWRL QQVQQQFSLL TGMEPPAAAP PPPSASSAME LFPFDGELAS 240 VKMEDPQGLN LPRHYLGVPG SDQYWHGAGA GDMGNSGGIG GGGGWTDFQS NFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009416134.1	2e-94	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A2H3YRJ6	1e-85	A0A2H3YRJ6_PHODC; dof zinc finger protein DOF5.1-like isoform X1
STRING	XP_008802760.1	2e-86	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	8e-46	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Spipo0G0180300