PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0175000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 217aa    MW: 23949.9 Da    PI: 6.2936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0175000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.9e-2180129255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a+++++g
  Spipo0G0175000  80 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEGAAAAYDEAALRFKG 129
                     7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3279138IPR001471AP2/ERF domain
PfamPF008471.5E-1380129IPR001471AP2/ERF domain
PROSITE profilePS5103224.73780137IPR001471AP2/ERF domain
CDDcd000181.60E-2180138No hitNo description
SMARTSM003801.4E-3580143IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2180138IPR016177DNA-binding domain
PRINTSPR003671.8E-118192IPR001471AP2/ERF domain
PRINTSPR003671.8E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
PEEEEELYTQ FTSERADQDA TVIVSALTHV ISTTREREVT DVLVSDPQKS EVPAAPPAVC  60
VERDSNPPSE EQGVAPRRRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DTAEGAAAAY  120
DEAALRFKGA KAKLNFPERV QGRTDLGFLV SPGIPRQVSD PMLRPPPSYP DLLQYAQLLR  180
GGDEDLHTVA ARLYGRRIIF SSVPPILASP GNSPQGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2579141467ATERF1
3gcc_A2e-2579141467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598740.11e-68ethylene-responsive transcription factor ERF113-like isoform X1
SwissprotQ9FH546e-46EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLM0S9Y49e-63M0S9Y4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P21430_0011e-63(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]