PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0165900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family RAV
Protein Properties Length: 317aa    MW: 35144.8 Da    PI: 10.4971
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0165900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.63e-1356104155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  + eAa+a++ a+++++g
  Spipo0G0165900  56 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNDEAEAARAYDVAAQRFRG 104
                     78****9888.8*********3.....5**********99*************98 PP
2B3102.32.7e-32184284196
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae++     +g   +++ l led+ g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++   ++
  Spipo0G0165900 184 FDKAVTPSDVGKLNRLVIPKQHAEKYfplqiDGAASKGILLNLEDSGGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVSFQRSTGLDR 278
                     89*****************************7788899**************************************************8766677 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +l++++
  Spipo0G0165900 279 QLYIGW 284
                     677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SuperFamilySSF541712.35E-1756112IPR016177DNA-binding domain
CDDcd000183.72E-2456112No hitNo description
PROSITE profilePS5103219.95457112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2057112IPR001471AP2/ERF domain
PfamPF008473.5E-857104IPR001471AP2/ERF domain
SMARTSM003801.7E-2857118IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.8E-41179290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30182282IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-29182273No hitNo description
PROSITE profilePS5086314.72184288IPR003340B3 DNA binding domain
SMARTSM010195.2E-25184288IPR003340B3 DNA binding domain
PfamPF023626.0E-29184286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKTPNLTSPA ASRLLSLHQP GVSSSCEKIH RVGSGASVVL DPEHGPEVES RKLPSSQYKG  60
VVPQPNGRWG AQIYEKHQRV WLGTFNDEAE AARAYDVAAQ RFRGRDAVTN FRPLSESDNH  120
GAAELLFINS HSKAEIVDML RKHTYRDELQ QGKRALGPTY GASPVAVHRH AISGVGSAAR  180
EHLFDKAVTP SDVGKLNRLV IPKQHAEKYF PLQIDGAASK GILLNLEDSG GKTWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK SLKAGDVVSF QRSTGLDRQL YIGWKPRSSS TFIPAVQALQ  300
LARPTQVMRL FGVNIAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5618129011120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923453.11e-152AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-131RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2H3Y0841e-148A0A2H3Y084_PHODC; AP2/ERF and B3 domain-containing transcription factor RAV1
STRINGXP_008791228.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-124related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]