PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0157800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 283aa    MW: 30095.4 Da    PI: 6.7907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0157800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-054868222
                    EETTTTEEESSHHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt 22
                    +Cp Cg+ F++k    rH+r+
  Spipo0G0157800 48 SCPLCGTAFRSKKWVFRHMRS 68
                    7******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEDEGDPPGF SEERQRSEER NNASTVNDFR AAALLFVAPA EARTDPISCP LCGTAFRSKK  60
WVFRHMRSLL ERELTPPPFP GEPQHAPAGH PAAENGSTST NGGPRATEAS EEDGVISAEE  120
AATTLMPLPS VMTDSLIMAV RGQSSVGGGP CRRKPTKMQR TALEELNGGG GGGKGNHTHQ  180
CVTGEIEASC SRRKRPKVQG GWGGGIDVEE TSGWRRGVRS AAAAARDPGN VQPAPRGRAM  240
DIDLNRSPPP EHDSGDVPGT THENHLYGGF LPPQRRFPIM HA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-