PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0157400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 152aa    MW: 16124.2 Da    PI: 10.2125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0157400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-152068355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr++  +gr+v+eIr p   gk++r++lg+f +ae Aa+a++aa   l+g
  Spipo0G0157400 20 FRGVRRRA-WGRYVSEIRLP---GKNTRVWLGSFSSAESAARAHDAASFFLHG 68
                    8****777.**********9...556*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-241982IPR001471AP2/ERF domain
PROSITE profilePS5103220.4681976IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-181977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-261977IPR001471AP2/ERF domain
PfamPF008471.9E-92068IPR001471AP2/ERF domain
PRINTSPR003676.3E-92031IPR001471AP2/ERF domain
CDDcd000182.84E-182678No hitNo description
PRINTSPR003676.3E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPVQRAARRV AEEGQRRRTF RGVRRRAWGR YVSEIRLPGK NTRVWLGSFS SAESAARAHD  60
AASFFLHGDP SALNFPAAAA SLPRPHSSSP ADIRAAASQA AAAPDGPGGA AAVCWQAAAV  120
EEAKLAPLHS PPRIDVCDFS DLWAEDSLLL I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-141876160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-141876463ATERF1
3gcc_A2e-141876463ATERF1
5wx9_A3e-1419761472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007489.11e-36PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ8LBQ72e-27ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1D1Z1L82e-51A0A1D1Z1L8_9ARAE; Ethylene-responsive transcription factor TINY (Fragment)
STRINGPOPTR_0409s00200.14e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.18e-11ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]