PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0155100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 223aa    MW: 24075.7 Da    PI: 5.8116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0155100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-1879130155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GVr ++ +g+++AeIrd +    + +r++lg+f+++e Aa a+++a+ + +g
  Spipo0G0155100  79 SCYRGVRKRP-WGKFAAEIRDSTR---HgRRVWLGTFDSPEAAALAYDQAAFATRG 130
                     79********.**********422...25**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.14E-2279140IPR016177DNA-binding domain
PfamPF008471.3E-1379130IPR001471AP2/ERF domain
SMARTSM003808.1E-3480144IPR001471AP2/ERF domain
PROSITE profilePS5103222.39280138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2880139IPR001471AP2/ERF domain
PRINTSPR003671.1E-98192IPR001471AP2/ERF domain
CDDcd000182.02E-1881139No hitNo description
PRINTSPR003671.1E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDTNFFQSRS CKLSSESRDR LFYPSQCLPF DENSSEEMLL LNVLTEASAA EAPSSSQSSK  60
EEEVQSSSND DDGSAAKQSC YRGVRKRPWG KFAAEIRDST RHGRRVWLGT FDSPEAAALA  120
YDQAAFATRG ALAVLNFPVE HVEQSLRGIA GRGAAAATAA DEGCSPVLAL KRRHAQRRRS  180
PGGKVPKRGS EASTAGNVVE LEDLGTEFLE ALLMASEPSR SW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2773141775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806912.19e-64LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1B-like
TrEMBLA0A2H3Z2282e-62A0A2H3Z228_PHODC; LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1B-like
STRINGXP_008806912.14e-63(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-42ethylene response factor 1