PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0151100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 201aa MW: 22259.3 Da PI: 11.1366 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.5 | 8.8e-12 | 87 | 144 | 31 | 86 |
.--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 +++ + ++de+gr+++v + r ++ + ++ ++GW +F+k+n+L++gD++ F++++ Spipo0G0151100 87 GRGVAIAIQDEHGRRYSVFWRRRTNGTTsyMICGAGWAHFAKDNQLNTGDVLRFYFSR 144 477899************9966333333556778*********************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-10 | 46 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.9E-9 | 87 | 144 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.0E-10 | 87 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-10 | 88 | 145 | No hit | No description |
PROSITE profile | PS50863 | 10.461 | 92 | 162 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MARVKRATAG SSSHDTAVHR HHHRRPSGKK ARASSPPPPF TSCCLFERKI YGVDLGQMKD 60 GLRVAQEKAA AVGRVLMEEE KALADSGRGV AIAIQDEHGR RYSVFWRRRT NGTTSYMICG 120 AGWAHFAKDN QLNTGDVLRF YFSRAVPREG SGRLYLGIRI IRPAPPPRRH NHHQRPSRPP 180 EEVLPVLPGY SSPPEHSSPG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 7e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0151100 |