PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0146500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 239aa MW: 26523.3 Da PI: 8.9781 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 74 | 93 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ Spipo0G0146500 74 FSCSVCNKTFNRYNNMQMHM 93 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.5e-05 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C CgksF + + ++H +++ Spipo0G0146500 158 FSCRRCGKSFAVRGDWRTHEKNC 180 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.35E-5 | 66 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-6 | 74 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 5.8E-5 | 74 | 93 | No hit | No description |
SMART | SM00355 | 0.071 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 121 | 153 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.58E-6 | 140 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 144 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 56 | 158 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.829 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVAEETSQKW KGLGEVDLNI GLPGLSEDSD GEAKSLVCDE VEVGGKMSGR HHPAPENRFW 60 IPTPAQILMG PILFSCSVCN KTFNRYNNMQ MHMWGHGPEY RKGPESLRGA QPAAMLKLPC 120 YCCADGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFSC RRCGKSFAVR GDWRTHEKNC 180 GKLWICACGS DFKHKRSLKD HIRSFGGSSV SHHFHAAFGK DCRFMETSSG GEVVEGGV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277045.1 | 1e-108 | PREDICTED: zinc finger protein WIP3 | ||||
Swissprot | Q8W030 | 2e-97 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A438FPJ8 | 1e-108 | A0A438FPJ8_VITVI; Zinc finger protein WIP3 | ||||
TrEMBL | A0A438HR81 | 1e-108 | A0A438HR81_VITVI; Zinc finger protein WIP3 | ||||
STRING | VIT_06s0080g00270.t01 | 1e-108 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20880.1 | 4e-97 | WIP domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0146500 |
Publications ? help Back to Top | |||
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