PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0135100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 274aa    MW: 29008.7 Da    PI: 4.8397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0135100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18124173154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     ++y+GVr+++ +g+W+AeIrdp     + +r++lg+++tae+Aa a+ +a+ +++
  Spipo0G0135100 124 PRYRGVRQRR-WGKWAAEIRDPI----KgARVWLGTYDTAEQAAMAYQRAADRIN 173
                     68*****998.**********72....46*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-24124176No hitNo description
PfamPF008471.4E-12124174IPR001471AP2/ERF domain
PROSITE profilePS5103220.653125182IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18125172IPR016177DNA-binding domain
SMARTSM003806.7E-24125185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-23125174IPR001471AP2/ERF domain
PRINTSPR003675.0E-11126137IPR001471AP2/ERF domain
PRINTSPR003675.0E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPGLRRALLI QGKPIFKRAP AAVFSGEEKQ GSGGRRRLLR RETPPLLVGA RKIRVLCCDP  60
DATDDSSGEE DDDDVAAPPL SAAGSRKKLL ISEIHMLPSR SRKKLPKAEA PSPPSTGGGA  120
AAVPRYRGVR QRRWGKWAAE IRDPIKGARV WLGTYDTAEQ AAMAYQRAAD RINAERSLSS  180
SSSSAVATGG AAVDSGDSDA PPPPSVSELV VPMLTAEGEL LGSPLGLDLD LVDPFLVDEF  240
GPGQEDDFVF GLGHVDGLDF DAFDPASLDW VDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-17126178659ATERF1
3gcc_A5e-17126178659ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZHC46e-59A0A1D1ZHC4_9ARAE; Ethylene-responsive transcription factor ERF118
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-16ERF family protein