PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0126300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 243aa MW: 26940.5 Da PI: 8.2054 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.2 | 2.4e-40 | 31 | 92 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+al+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Spipo0G0126300 31 PEQALRCPRCDSTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGTLRNVPVGGGCRKNKRSSS 92 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 32 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-33 | 33 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.46 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGSHLLEEVF GCTNPSPPPS QQPDRRPRPQ PEQALRCPRC DSTNTKFCYY NNYSLSQPRY 60 FCKGCRRYWT KGGTLRNVPV GGGCRKNKRS SSKKIQDQAL LQTLPPPPPP PLTFDHNELS 120 LAFARLQKPL PTGQLGLDDH RHDSFMPPQA PGFLDDSLSS FSSLYYGLDG QGLLPFEMLS 180 GATAAIKQEP SYRCVEGDTS RLLMGLHWPV AVDGDVTVEA GREYWNGLGS TWQHGLVNSF 240 LI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922502.1 | 4e-73 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A1D1YVB2 | 8e-90 | A0A1D1YVB2_9ARAE; Dof zinc finger protein DOF2.1 | ||||
STRING | XP_008802348.1 | 4e-72 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-40 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0126300 |