PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0125200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 212aa MW: 23755.2 Da PI: 9.3076 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 106.1 | 1.9e-33 | 131 | 179 | 2 | 50 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvP 50 +e lkcprCdstntkfCy+nnysl qPr+fCk+CrryWt+GGalrnvP Spipo0G0125200 131 PEPGLKCPRCDSTNTKFCYFNNYSLLQPRHFCKTCRRYWTRGGALRNVP 179 56789******************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 115 | 179 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-29 | 135 | 185 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.434 | 135 | 189 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 137 | 173 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
SIITSGRLGK AKDSCGPWLL LISGLFSKLC RRHGLGLASM TPYKCLRGDI EPHRPLPEKK 60 EEKDQTMVFP SVPAFLDPPN WNQQPNYQQE AGGEVHQQPP APPQRPDDNV PGTARTSSMA 120 DRARLAKLPQ PEPGLKCPRC DSTNTKFCYF NNYSLLQPRH FCKTCRRYWT RGGALRNVPE 180 EINTRILTEG MNYVAETAKK IEEHRITIGL G* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099595 | 3e-45 | FP099595.1 Phyllostachys edulis cDNA clone: bphylf055n22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384882.1 | 6e-56 | PREDICTED: dof zinc finger protein DOF5.1-like isoform X2 | ||||
Swissprot | Q9M2U1 | 7e-39 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A1D1ZK93 | 1e-50 | A0A1D1ZK93_9ARAE; Dof zinc finger protein DOF3.6 (Fragment) | ||||
TrEMBL | M0RV22 | 2e-50 | M0RV22_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P24420_001 | 3e-51 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 9e-37 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0125200 |