PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo0G0123100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 245aa MW: 27289.8 Da PI: 8.9072 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.9 | 7.4e-32 | 19 | 121 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae+h + +e++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Spipo0G0123100 19 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldPSCSEKGLSLCFEDRTGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFQRGlGEsAR 113 89*************************998444457789************************************************65455455 PP E..EEEEE CS B3 90 felvvkvf 97 +l++ + Spipo0G0123100 114 HRLFIDWK 121 56666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-42 | 12 | 131 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.03E-30 | 16 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.23E-27 | 17 | 106 | No hit | No description |
PROSITE profile | PS50863 | 14.325 | 19 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-29 | 19 | 123 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-22 | 19 | 124 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDSTDNGGGA AMVEKEHMFD KVVTPSDVGK LNRLVIPKQH AEKHFPLDPS CSEKGLSLCF 60 EDRTGKQWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD TVSFQRGLGE SARHRLFIDW 120 KRRPDLPMSP RLHQNPALMS FARSVVPWTN FVSSTSGTFD PRRHLGFAYN AAAYPSDTFC 180 NAAAKRVRLF GVNLDCAATG EADSDGDSAD RLRLSLGGSE IPQSPIKDKH PMSLDLEILN 240 AVTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-62 | 12 | 126 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-62 | 12 | 126 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798126.1 | 8e-78 | B3 domain-containing protein Os03g0120900-like | ||||
Swissprot | Q8LMR9 | 1e-71 | Y3209_ORYSJ; B3 domain-containing protein Os03g0120900 | ||||
TrEMBL | A0A1D1XRL4 | 6e-84 | A0A1D1XRL4_9ARAE; B3 domain-containing protein Os03g0120900 | ||||
STRING | GSMUA_Achr1P03600_001 | 4e-75 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-67 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo0G0123100 |
Publications ? help Back to Top | |||
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